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Table 3 MutPred prediction for the most deleterious missense variants observed in LEP gene

From: D76V, L161R, and C117S are the most pathogenic amino acid substitutions with several dangerous consequences on leptin structure, function, and stability

Variant

MutPred2 score

Remarks

Affected PROSITE and ELM Motifs

D76V

0.436

–

–

C117S

0.735

-

ELME000063

 

Molecular mechanisms with P values ≤ 0.05

Probability

P value

 

Altered metal binding

0.39

6.9e–03

L161R

0.720

–

ELME000106, ELME000136, ELME000159

 

Molecular mechanisms with P values ≤ 0.05

Probability

P value

 

Gain of intrinsic disorder

0.36

0.02

 

Altered stability

0.21

0.01

 

Altered transmembrane protein

0.14

0.02