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Table 2 Overlapping NCOR1 and MAP2K3 variants across 10 subjects with VSD and TOF positioned on chromosome 17

From: Whole-exome sequencing and homozygosity mapping identify variants in NCOR1 and MAP2K3 associated with non-syndromic congenital heart defects

Gene

Chromosome position

Variant type

Exon number

DNA level changes

Protein level changes

No. of cases

Rs Id

SIFT/polyphen/mutation taster

NCOR1

17:16068377-16068377

Nonsynonymous SNV

2

c.[G207C]

p.K69N

8 (5 VSDs and 3 TOFs)

rs200020868

D/D/D

17:16068340-16068340

2

c.[G244A]

p.E82K

10 (7 VSDs and 3 TOFs)

rs76780359

D/P/D

17:16068343-16068343

2

c.[C241T]

P.R81X

10 (7 VSDs and 3 TOFs)

rs78230791

D/-/D

MAP2K3

17:21204187-21204187

5

c.[G194T]

P.R65L

10 (7 VSDs and 3 TOFs)

rs56067280

D/D/P

17:21204192-21204192

5

c.[C199T]

p.R67W

10 (7 VSDs and 3 TOFs)

rs56216806

D/D/D

17:21207834-21207834

8

c.[C578T]

p.T193M

5 (4 VSDs and 1 TOF)

rs58609466

D/D/D

  1. The read depth (DP) of all variants is more than 100; as a result, there is no false positive in variant reports
  2. D damaging, P probably damaging