Skip to main content

Table 1 Oligonucleotide primers sequence from 5´ - 3´ used for the amplification of 5 viruses causing diarrhoea

From: Use of multiplex PCR in diagnosis of childhood acute viral diarrhoea caused by rotavirus, norovirus, astrovirus and adenovirus in Upper Egypt

Virus and primer sequence

Amplicon size (bp)

Astrovirus

 

PreCAP1 GGA CTG CAA AGC TTC GTG

82b GTG AGC CAC CAG CCA TCC CT-

719

Group A rotavirus

 

VP7 1_(F) AAA GGA TGG CCA ACA GGA TCA GT

END9(S) GTA TAR AAH ACT TGC CAC CAT-

569

Adenovirus

 

Ad1 TTC CCC ATG GCI CAY AAC AC + 

Ad2 CCC TGG TAK CCR ATR TTG AT-

482

Norovirus G2

 

COG2F CAR GAR BCN ATG TTY AGR TGG ATG AG + 

G2SKR CCR CCN GCA TRH CCR TTR TAC AT-

387

Norovirus G1

 

G1SKF CTG CCC GAA TTY GTA AAT GA + 

G1SKR CCA ACC CAR CCA TTR TAC A-

330

  1. bp base pair