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Table 1 Human cell line-based transcriptome datasets considered in the present work

From: Genome-wide landscape of RNA-binding protein (RBP) networks as potential molecular regulators of psychiatric co-morbidities: a computational analysis

S. No

RBP

Dataset (GEO ID)

Cell line

DEGs (up/down regulated)

Experiment (Knock-down/KD or knockout/KO)

Reference

1

QKI

GSE153803

C25Cl48 (muscular cell line)

None

siRNA KD, RNA-seq

[32]

2

ELAVL2

GSE69092

Primary neural progenitor cells

0/3

shRNA KD, RNA-seq

[33]

3

EIF2S1

GSE80933

HepG2 (human liver cancer cell line)

2656/2748

shRNA KD, RNA-seq

[34]

 

GSE80900

K562 (lymphoblasts)

37/25

shRNA KD, RNA-seq

 

4

SRSF3

GSE98016

MDA-MB231 (epithelial cell line from breast cancer tissue)

2909/3394

shRNA KD, RNA-seq

[35]

 

GSE130501

Primary glioma stem-like cells (GSCs)

257/180

CRISPR KO, RNA-seq

[36]

 

GSE177820

K562 (lymphoblasts)

2277/1455

CRISPR KO, RNA-seq

[34]

 

GSE71095

HeLa cells

36/2

siRNA KD, RNA-seq

[37]

 

GSE71745

A2780 (ovarian cancer cell line)

None

siRNA KD, microarray

[37]

5

IGF2BP2

GSE80946

K562 (lymphoblasts)

1144/289

shRNA KD, RNA-seq

[34]

 

GSE80890

HepG2 (human liver cancer cell line)

1709/1926

shRNA KD, RNA-seq

 
 

GSE146726

UMUC3 (Bladder carcinoma)

472/631

siRNA KD, RNA-seq

[38]

  

J8

566/511

  

6

EIF4B

GSE177138

HepG2 (human liver cancer cell line)

9/7

CRISPR KO, RNA-seq

[34]

 

GSE80923

K562 (lymphoblasts)

20/43

shRNA KD, RNA-seq

 
 

GSE80875

HepG2 (human liver cancer cell line)

2490/2474

  

7

SNRNP70

GSE88425

HepG2 (human liver cancer cell line)

1960/1877

shRNA KD, RNA-seq

 

8

FMR1

GSE177341

K562 (lymphoblasts)

1346/1058

shRNA KD, RNA-seq

 
 

GSE117248

hiPSC-derived neurons

2788/2864

KO, RNA-seq

[39]

9

DAZAP1

GSE88637

K562 (lymphoblasts)

261/51

shRNA KD, RNA-seq

[34]

 

GSE88114

HepG2 (human liver cancer cell line)

531/651

  
 

GSE80929

HepG2 (human liver cancer cell line)

1450/1060

  
 

GSE153803

C25Cl48 (Muscular cell line)

None

siRNA KD, RNA-seq

[32]

 

GSE97262

SH-SY5Y (neuroblastoma cell line)

1684/3346

 

[40]

10

MBNL1

GSE149435

MDA-MB-231 (epithelial breast cancer cell line)

673/693

siRNA KD, RNA-seq

[41]

 

GSE114383

PC3 (Prostate cancer cell line)

903/15

Antisense oligonucleotide-mediated KD, RNA-seq

[42]

 

GSE41987

HeLa

None

MBNL1-overexpression, microarray

-

 

GSE88116

K562 (lymphoblasts)

1467/527

shRNA KD, RNA-seq

[34]

 

GSE76487

MDA-MB-231(breast cancer cell line)

0/6

shRNA KD, RNA-seq

[43]

 

GSE153803

C25Cl48 muscular cell line

None

siRNA KD, RNA-seq

[32]