| Before FASTQ filtering | After FASTQ filtering |
---|---|---|
Total reads | 56,179,476 | 55,159,718 |
Total bases | 8,483,100,876 | 7,830,438,155 |
Q20 bases | 8,285,622,224 | 7,743,137,555 |
Q30 bases | 7,961,919,235 | 7,492,159,554 |
Q20 rate | 0.976721 | 0.988851 |
Q30 rate | 0.938562 | 0.9568 |
Read1 mean length | 151 | 142 |
Read2 mean length | 151 | 141 |
GC content | 0.520673 | 0.52038 |