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Table 2 The outcomes of FireBrowse for assessment of clinical features versus mRNA genes

From: An investigation of 6-Shogaol effects on MCF7 cell lines through a systems biology approach

VariableName

PATHOLOGY_T_STAGE

PATHOLOGY_N_STAGE

PATHOLOGY_M_STAGE

ResultType

SpearmanCorr

corrP

Q

SpearmanCorr

corrP

Q

Wilcoxon test P

Q

AUC

ASCL1

0.0562

0.1987

0.473

− 0.006

0.8925

0.965

0.5857

0.999

0.5413

CDH12

0.0614

0.1603

0.425

0.022

0.6187

0.849

0.5555

0.999

0.5447

ADH7

− 0.048

0.2725

0.557

− 0.0226

0.6081

0.843

0.7523

0.999

0.524

ARL2BP

− 0.0316

0.4704

0.722

0.0797

0.07081

0.338

0.3758

0.999

0.5671

ARL6IP6

− 0.0764

0.08062

0.303

− 0.0204

0.6442

0.862

0.3298

0.999

0.5739

BCL2L12

0.0855

0.05035

0.241

0.0276

0.5319

0.801

0.7442

0.999

0.5248

C5orf52

Not available

Not available

Not available

Not available

Not available

Not available

Not available

Not available

Not available

CREB3L1

− 0.0431

0.325

0.608

0.1092

0.01319

0.151

0.3107

0.999

0.5768

CRELD1

0.0318

0.4681

0.721

− 0.0278

0.5295

0.799

0.7828

0.999

0.5209

CTBS

− 0.1253

0.004059

0.0699

− 0.1071

0.01499

0.162

0.4891

0.999

0.5525

DEPDC1B

0.1125

0.009939

0.107

0.0155

0.7254

0.901

0.4444

0.999

0.558

DHX37

0.1048

0.01639

0.139

0.0424

0.3366

0.667

0.3918

0.999

0.5649

EHD2

− 0.0543

0.2143

0.492

0.0489

0.2684

0.605

0.8616

0.999

0.5133

FAM83D

0.1393

0.001387

0.0436

0.0753

0.08782

0.373

0.2772

0.999

0.5824

KIF4A

0.182

2.77E−05

0.00861

0.0662

0.1334

0.447

0.1619

0.999

0.606

MRPL54

0.0342

0.4352

0.695

0.0484

0.2727

0.609

0.4138

0.999

0.562

MYCL1

0.069

0.1148

0.359

− 0.029

0.5108

0.788

0.5585

0.999

0.5444

OR2G2

0.1089

0.0126

0.121

0.0649

0.1412

0.458

0.5839

0.999

0.5415

PALMD

− 0.0751

0.08602

0.311

− 0.0586

0.1839

0.514

0.4686

0.999

0.5549

PPIF

− 0.0128

0.7698

0.904

0.012

0.785

0.925

0.147

0.999

0.6099

PSMG1(DSCR2)

0.0416

0.3423

0.624

− 0.0381

0.3888

0.709

0.8784

0.999

0.5116

RMDN2(FAM82A)

− 0.1211

0.005494

0.0803

− 0.0259

0.5572

0.816

0.3933

0.999

0.5647

RPS23

− 0.0542

0.2151

0.493

− 0.0387

0.3809

0.702

0.01789

0.999

0.6794

SERPINA3

− 0.0569

0.1938

0.467

− 0.0669

0.1295

0.441

0.3289

0.999

0.574

TDRD9

− 0.0371

0.3969

0.667

0.0776

0.07846

0.356

0.4551

0.999

0.5566

TMEM136

− 0.0733

0.09355

0.324

− 0.1036

0.01865

0.179

0.654

0.999

0.534

TMPRSS15(PRSS7)

0.0734

0.09308

0.323

0.071

0.1077

0.409

0.932

0.999

0.5065

TRADD

0.0769

0.07856

0.299

0.1267

0.003973

0.0906

0.187

0.999

0.6

YEATS4

0.0117

0.7893

0.913

− 0.0594

0.1786

0.508

0.9511

0.999

0.5047

ZNF704

0.0012

0.9775

0.992

0.0525

0.2341

0.569

0.5741

0.999

0.5426

VariableName

YEARS_TO_BIRTH

RADIATION_THERAPY

NUMBER_OF_LYMPH_NODES

ResultType

SpearmanCorr

corrP

Q

Wilcoxon test P

Q

AUC

SpearmanCorr

corrP

Q

ASCL1

0.0896

0.04105

0.123

0.08574

0.537

0.546

− 0.0592

0.2332

0.665

ADH7

0.0174

0.6914

0.815

0.5353

0.892

0.5166

− 0.0654

0.1873

0.623

ARL2BP

− 0.0165

0.708

0.826

0.7883

0.955

0.5072

0.1254

0.01124

0.237

ARL6IP6

− 0.0721

0.1003

0.232

0.7802

0.953

0.5075

− 0.0017

0.9723

0.994

BCL2L12

− 0.1129

0.009983

0.0448

0.7943

0.956

0.507

0.0109

0.8255

0.959

C5orf52

Not available

Not available

Not available

Not available

Not available

Not available

Not available

Not available

Not available

CDH12

− 0.0389

0.3757

0.559

0.4698

0.866

0.5194

0.0411

0.4072

0.783

CREB3L1

2.00E−04

0.9972

0.999

0.6371

0.918

0.5126

0.1392

0.004862

0.176

CRELD1

0.1039

0.01773

0.0676

8.06E−05

0.0913

0.6056

− 0.0209

0.6733

0.904

CTBS

0.0348

0.4282

0.606

0.005811

0.223

0.5739

− 0.0467

0.347

0.748

DEPDC1B

− 0.0971

0.02679

0.0911

0.7703

0.952

0.5078

0.0194

0.6958

0.912

DHX37

− 0.071

0.1059

0.241

0.1473

0.627

0.5388

0.0246

0.6208

0.884

EHD2

− 0.0776

0.07715

0.193

0.9618

0.993

0.5013

0.0841

0.08976

0.488

FAM83D

− 0.1004

0.02206

0.079

0.8784

0.979

0.5041

0.0528

0.287

0.708

KIF4A

− 0.1073

0.0144

0.0579

0.879

0.98

0.5041

0.0482

0.3311

0.737

MRPL54

0.1897

1.33E−05

0.000391

0.3667

0.811

0.5242

0.1126

0.02294

0.303

MYCL1

0.1018

0.02028

0.0745

0.153

0.635

0.5383

− 0.0501

0.3129

0.728

OR2G2

0.0974

0.02636

0.09

0.007625

0.24

0.5715

0.061

0.2186

0.653

PALMD

− 0.1313

0.002711

0.0177

0.7352

0.945

0.5091

− 0.0345

0.4871

0.825

PPIF

− 0.0446

0.3103

0.497

0.22

0.709

0.5329

− 0.0111

0.8231

0.958

PSMG1(DSCR2)

− 0.0767

0.08072

0.199

0.402

0.83

0.5225

− 0.0683

0.1683

0.601

RMDN2(FAM82A)

0.0162

0.7131

0.829

0.2962

0.767

0.528

− 0.049

0.3231

0.732

RPS23

0.0925

0.03492

0.11

0.5689

0.902

0.5153

− 0.0195

0.6949

0.911

SERPINA3

0.1289

0.003228

0.02

0.6112

0.912

0.5136

− 0.0241

0.628

0.887

TDRD9

− 0.0249

0.5703

0.725

0.08365

0.535

0.5464

0.0368

0.4585

0.81

TMEM136

0.0473

0.2819

0.467

0.8048

0.958

0.5066

− 0.0819

0.09837

0.498

TMPRSS15(PRSS7)

0.015

0.7329

0.842

0.4832

0.871

0.5188

0.0547

0.2702

0.696

TRADD

− 0.0593

0.1768

0.341

0.5873

0.906

0.5146

0.1027

0.03812

0.36

YEATS4

0.0419

0.3408

0.527

0.9355

0.988

0.5022

− 0.0165

0.7396

0.929

ZNF704

0.1834

2.57E−05

0.000633

0.643

0.919

0.5124

− 3.00E−04

0.9945

0.998

VariableName

HISTOLOGICAL_TYPE

RACE

ResultType

Kruskal_Wallis_P

Q

Kruskal_Wallis_P

Q

ASCL1

0.6302

0.715

0.4264

0.706

CDH12

0.287

0.445

0.004113

0.108

KIF4A

5.29E−05

0.00132

0.00361

0.103

PSMG1(DSCR2)

6.92E−05

0.00159

0.251

0.593

ZNF704

0.6903

0.759

0.05046

0.312

BCL2L12

0.002162

0.0182

0.09876

0.41

DEPDC1B

0.001027

0.0108

0.04954

0.31

ARL6IP6

0.1319

0.281

0.9639

0.982

RMDN2(FAM82A)

0.0006258

0.00758

0.01507

0.192

FAM83D

7.92E−07

7.97E−05

0.06783

0.353

YEATS4

0.6501

0.729

0.6305

0.806

PALMD

0.001206

0.0121

0.003709

0.104

ARL2BP

0.8425

0.874

0.5415

0.762

RPS23

0.004951

0.0321

3.05E−05

0.00937

TMEM136

0.246

0.406

0.01884

0.209

PPIF

0.7755

0.823

0.4352

0.711

DHX37

0.1737

0.333

0.2396

0.582

ADH7

0.4253

0.563

0.1695

0.509

TDRD9

0.004103

0.0283

0.008456

0.149

MRPL54

0.8367

0.87

0.9014

0.949

EHD2

0.001054

0.011

0.9842

0.992

TRADD

0.06848

0.188

0.7823

0.885

C5orf52

Not available

Not available

Not available

Not available

CREB3L1

0.3843

0.53

0.7106

0.849

MYCL1

0.1923

0.352

0.7082

0.848

TMPRSS15(PRSS7)

0.6754

0.747

0.005527

0.122

OR2G2

0.1753

0.334

0.002666

0.09

CTBS

0.8408

0.873

0.9667

0.983

CRELD1

0.1945

0.355

0.2027

0.544

SERPINA3

0.1757

0.335

0.06304

0.343